Sequence Data
GenBank accessions
Public sequence data from the lab's studies, archived at NCBI and EBI/ENA. The BioProjects below are the top-level landing pages — each gathers all of a study's samples and raw reads; individual genomes and marker-gene libraries follow.
Sequencing projects
- NCBIMetabarcoding surveys of the Arctic marine environmentPRJNA4212932,007 samples · 4,273 runs
- NCBIArctic MetagenomesPRJNA681031305 samples · 305 runs
- ENAArctic Ocean metagenomes from HLY1502 (2015 GEOTRACES Healy cruise)PRJEB14154204 runs
- NCBICold Climate Oil Biodegradation ExperimentsPRJNA1176269139 samples · 139 runs
- NCBICryosphere Bacterial GenomesPRJNA42092394 samples · 97 runs
- NCBIBacteria cultured from Chesapeake BayPRJNA64843253 samples · 53 runs
- NCBIMetabarcoding of Seawater from Machias Seal IslandPRJNA117097631 samples · 44 runs
- NCBISulfolane-degrading Rhodoferax — metagenome-assembled genome (stable isotope probing)PRJNA43472131 runs
- NCBISea-ice and seawater fungi — 18S/28S rRNA surveys of the western ArcticPRJNA31543816 runs
- NCBIMetabarcoding Surveys of Freshwater EcosystemsPRJNA141695316 samples · 16 runs
- NCBIMicrobial eukaryotes in Arctic sea ice — 18S seasonality surveyPRJNA28667612 runs
- ENASea-ice bacteria RNA-seq — temperature stress in Polaribacter and ShewanellaPRJEB197918 runs
- NCBIBering Sea eukaryotic microbes — 18S rRNA across ice-covered watersPRJNA305766
Genomes & marker-gene libraries
Persistence of bacterial and archaeal communities in sea ice through an Arctic winter
- Bacterial 16S rRNA genesEU836892–EU837057, FJ753995–FJ754002174 sequences
- Archaeal 16S rRNA genesEU486859–EU48695597 sequences
- Eukaryotic 18S rRNA genesFJ753982–FJ75399413 sequences
Genome of Sphaeroforma sirkka strain B5 (Oxford Nanopore MinION + Illumina HiSeq)
- Whole-genome assemblyGCA_001586965BioSample